Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
dkgAAraC family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
yeaG
PrkA family serine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.759
DSJ_12840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.677
msyB
secY/secA suppressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.625
DSJ_06390
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.622
DSJ_03360
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.568
yncB
NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.540
osmC
OsmC family peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.521
tas
NADP(H)-dependent aldo-keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.520
DSJ_21195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.516
DSJ_19260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.495
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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