Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_21355Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)    
Predicted Functional Partners:
DSJ_21350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.944
DSJ_21345
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.940
DSJ_21340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
DSJ_21335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.922
DSJ_21330
L-seryl-tRNA selenium transferase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.899
DSJ_03095
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
rcsA
Helix-turn-helix transcriptional regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds to DNA to regulate expression of genes.
  
     0.499
DSJ_00375
Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
DSJ_14400
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
yihT
Aldolase; Cleaves 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP) to form dihydroxyacetone phosphate (DHAP) and 3-sulfolactaldehyde (SLA). Belongs to the aldolase LacD family.
 
     0.474
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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