STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_21385Sugar isomerase; Catalyzes the isomerization of sulfoquinovose (SQ) to 6- deoxy-6-sulfo-D-fructose (SF). (413 aa)    
Predicted Functional Partners:
DSJ_21380
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.920
yihQ
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.869
yihT
Aldolase; Cleaves 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP) to form dihydroxyacetone phosphate (DHAP) and 3-sulfolactaldehyde (SLA). Belongs to the aldolase LacD family.
 
  
 0.867
yihU
Gamma-hydroxybutyrate dehydrogenase; Reduces 3-sulfolactaldehyde (SLA) to 2,3-dihydroxypropane 1- sulfonate (DHPS); Belongs to the HIBADH-related family. 3-sulfolactaldehyde reductase subfamily.
  
  
 0.788
yihV
Ribokinase; Phosphorylates 6-deoxy-6-sulfo-D-fructose (SF) to 6-deoxy-6- sulfo-D-fructose 1-phosphate (SFP); Belongs to the carbohydrate kinase PfkB family.
    
 0.743
yihP
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.657
yihO
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.612
DSJ_21370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
yihW
DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.545
DSJ_20100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.413
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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