STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytfNTranslocation and assembly module TamB; Derived by automated computational analysis using gene prediction method: Protein Homology. (1255 aa)    
Predicted Functional Partners:
ytfM
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
ytfP
Gamma-glutamylcyclotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.861
mukB
Cell division protein MukB; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.
  
     0.751
pgpB
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.710
tsx
Nucleoside-specific channel-forming protein Tsx; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
tmcA
tRNA cytosine(34) acetyltransferase TmcA; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
  
     0.613
yigM
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
nadR
NadR transcriptional repressor / ribosylnicotinamide kinase / NMN adenylyltransferase; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
DSJ_03970
Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.543
yhbP
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0306 family.
  
     0.515
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.