dppA protein (Pantoea stewartii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dppA

ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)

Predicted Functional Partners:

dppC

0.986

dppB

0.981

dppF

0.964

dppD

0.952

DSJ_06965

0.779

sapC

0.753

ddpB

0.736

sapB

0.689

DSJ_06960

0.665

ddpC

0.648

Your Current Organism:

Pantoea stewartii

NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSJ_06960	DSJ_06965	DSJ_06960	DSJ_06965	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
DSJ_06960	ddpB	DSJ_06960	DSJ_01410	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
DSJ_06960	dppA	DSJ_06960	DSJ_22330	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
DSJ_06960	dppB	DSJ_06960	DSJ_22325	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter permease DppB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
DSJ_06960	dppD	DSJ_06960	DSJ_22315	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.972
DSJ_06960	dppF	DSJ_06960	DSJ_22310	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.933
DSJ_06960	sapB	DSJ_06960	DSJ_14375	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
DSJ_06965	DSJ_06960	DSJ_06965	DSJ_06960	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
DSJ_06965	ddpC	DSJ_06965	DSJ_01415	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
DSJ_06965	dppA	DSJ_06965	DSJ_22330	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
DSJ_06965	dppC	DSJ_06965	DSJ_22320	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter permease DppC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
DSJ_06965	dppD	DSJ_06965	DSJ_22315	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.856
DSJ_06965	dppF	DSJ_06965	DSJ_22310	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.825
DSJ_06965	sapC	DSJ_06965	DSJ_14380	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
ddpB	DSJ_06960	DSJ_01410	DSJ_06960	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
ddpB	ddpC	DSJ_01410	DSJ_01415	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ddpB	dppA	DSJ_01410	DSJ_22330	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
ddpB	dppC	DSJ_01410	DSJ_22320	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter permease DppC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
ddpB	dppD	DSJ_01410	DSJ_22315	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.868
ddpB	dppF	DSJ_01410	DSJ_22310	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.849

page 1 of 5

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About