Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
yiaFHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
ygaC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
rcsF
Rcs stress response system protein RcsF; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.772
ypfN
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
yacC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
DSJ_14820
MltA-interacting protein MipA; Scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
DSJ_00670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.748
aaeX
Transporter; Membrane protein AaeX; the gene is a member of the aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
yniB
2-deoxyglucose-6-phosphatase; YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.741
yiiQ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
  
     0.737
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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