Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHF01356.1 | EHF01865.1 | HMPREF1008_01836 | HMPREF1008_01489 | Pyruvate:ferredoxin oxidoreductase. | Hypothetical protein. | 0.401 |
EHF01356.1 | EHF01867.1 | HMPREF1008_01836 | HMPREF1008_01491 | Pyruvate:ferredoxin oxidoreductase. | Hypothetical protein. | 0.953 |
EHF01356.1 | EHF01868.1 | HMPREF1008_01836 | HMPREF1008_01492 | Pyruvate:ferredoxin oxidoreductase. | Hypothetical protein. | 0.783 |
EHF01356.1 | miaB | HMPREF1008_01836 | HMPREF1008_01468 | Pyruvate:ferredoxin oxidoreductase. | tRNA-I(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.401 |
EHF01356.1 | rimO | HMPREF1008_01836 | HMPREF1008_01476 | Pyruvate:ferredoxin oxidoreductase. | MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.401 |
EHF01865.1 | EHF01356.1 | HMPREF1008_01489 | HMPREF1008_01836 | Hypothetical protein. | Pyruvate:ferredoxin oxidoreductase. | 0.401 |
EHF01865.1 | EHF01867.1 | HMPREF1008_01489 | HMPREF1008_01491 | Hypothetical protein. | Hypothetical protein. | 0.668 |
EHF01865.1 | EHF01868.1 | HMPREF1008_01489 | HMPREF1008_01492 | Hypothetical protein. | Hypothetical protein. | 0.715 |
EHF01865.1 | EHF01869.1 | HMPREF1008_01489 | HMPREF1008_01493 | Hypothetical protein. | Hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.552 |
EHF01865.1 | era | HMPREF1008_01489 | HMPREF1008_01485 | Hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.707 |
EHF01865.1 | lepA | HMPREF1008_01489 | HMPREF1008_01494 | Hypothetical protein. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.529 |
EHF01865.1 | rimO | HMPREF1008_01489 | HMPREF1008_01476 | Hypothetical protein. | MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.410 |
EHF01865.1 | rlmN | HMPREF1008_01489 | HMPREF1008_00499 | Hypothetical protein. | Cfr family radical SAM enzyme; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.598 |
EHF01865.1 | rpsT | HMPREF1008_01489 | HMPREF1008_01495 | Hypothetical protein. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.415 |
EHF01867.1 | EHF01356.1 | HMPREF1008_01491 | HMPREF1008_01836 | Hypothetical protein. | Pyruvate:ferredoxin oxidoreductase. | 0.953 |
EHF01867.1 | EHF01865.1 | HMPREF1008_01491 | HMPREF1008_01489 | Hypothetical protein. | Hypothetical protein. | 0.668 |
EHF01867.1 | EHF01868.1 | HMPREF1008_01491 | HMPREF1008_01492 | Hypothetical protein. | Hypothetical protein. | 0.531 |
EHF01867.1 | EHF01869.1 | HMPREF1008_01491 | HMPREF1008_01493 | Hypothetical protein. | Hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.525 |
EHF01867.1 | era | HMPREF1008_01491 | HMPREF1008_01485 | Hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.447 |
EHF01867.1 | lepA | HMPREF1008_01491 | HMPREF1008_01494 | Hypothetical protein. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.566 |
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