STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAV25293.1HDIG domain-containing protein. (237 aa)    
Predicted Functional Partners:
GAV26120.1
GGDEF domain-containing protein.
 
 
  0.951
GAV25381.1
GGDEF domain-containing protein.
 
 
  0.928
GAV25277.1
GGDEF domain-containing protein.
 
 
  0.762
GAV25592.1
Hypothetical protein.
 
 
  0.671
GAV25591.1
Hypothetical protein.
 
 
  0.660
GAV24566.1
REC domain-containing diguanylate cyclase.
  
 0.606
GAV25152.1
GGDEF domain-containing protein.
 
 
  0.593
GAV26492.1
GGDEF domain-containing protein.
 
 
  0.582
GAV25709.1
HDIG domain-containing protein.
 
0.573
GAV25292.1
Hypothetical protein.
       0.565
Your Current Organism:
Carboxydothermus islandicus
NCBI taxonomy Id: 661089
Other names: C. islandicus, Carboxydothermus islandicus Novikov et al. 2011, Carboxydothermus sp. SET IS-9, DSM 21830, VKM B-2561, strain SET IS-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.