Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LLO_0010Hypothetical protein, carbohydrate-selective porin OprB domain; Equals llo0010. (438 aa)    
Predicted Functional Partners:
LLO_0007
Putative amidase; Equals llo0007; similar to amidase.
 
     0.795
LLO_2114
Putative membrane protein; Equals llo2114.
  
     0.769
LLO_1641
Hypothetical protein, weakly similar to eukaryotic proteins; Equals llo1641.
  
     0.764
LLO_0087
Hypothetical protein; Equals llo0087.
  
     0.760
traI
TraI protein; Equals llo2892.
  
     0.759
LLO_1894
Putative ankyrin repeat protein; Equals llo1894.
  
     0.756
LLO_0775
Hypothetical protein; Equals llo0775; Belongs to the UPF0145 family.
  
   
 0.746
LLO_0673
Putative acetyltransferase, GNAT family; Equals llo0673.
  
     0.740
LLO_2579
Putative Tfp pilus assembly protein PilX; Equals llo2579.
  
     0.739
LLO_2984
Putative protein kinase; Equals llo2984.
  
     0.738
Your Current Organism:
Legionella longbeachae
NCBI taxonomy Id: 661367
Other names: L. longbeachae NSW150, Legionella longbeachae NSW150, Legionella longbeachae str. NSW150, Legionella longbeachae strain NSW150
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