Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LLO_2005Putative regulatory protein (GGDEF domain); Equals llo2005. (708 aa)    
Predicted Functional Partners:
LLO_1253
Regulatory protein (GGDEF domain); Equals llo1253.
 
 
0.961
LLO_3125
Regulatory protein (GGDEF and EAL domains); Equals llo3125.
 
 
0.961
LLO_2490
Putative sensory histidine-kinase / response regulator; Equals llo2490.
 
 0.938
LLO_3442
Putative sensory box histidine kinase/response regulator; Equals llo3442.
 
 
 0.936
LLO_3392
Putative regulatory protein (GGDEF and EAL domains); Equals llo3392.
  
 
 0.915
LLO_0090
Putative regulatory protein (GGDEF, PAS, PAC domains); Equals llo0090.
 
 
0.914
letS
Legionella transmission sensor LetS; Equals llo1235.
 
 0.880
LLO_3414
Putative regulatory protein (GGDEF domain); Equals llo3414.
 
 
0.844
LLO_0658
Putative DNA-damage inducible protein P (C-terminal part); Equals llo0657b.
 
 
 0.843
LLO_1734
Putative regulatory protein (EAL domain); Equals llo1734.
 
 0.836
Your Current Organism:
Legionella longbeachae
NCBI taxonomy Id: 661367
Other names: L. longbeachae NSW150, Legionella longbeachae NSW150, Legionella longbeachae str. NSW150, Legionella longbeachae strain NSW150
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