Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LLO_2015Equals llo2015; similar to conserved hypothetical protein. (252 aa)    
Predicted Functional Partners:
LLO_2017
Equals llo2017; similar to conserved hypothetical protein; Belongs to the BolA/IbaG family.
 
     0.844
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.817
yrbE
Toluene transporter subunit: membrane component of ABC superfamily; Equals llo2021; similar to permease of ABC transporter.
 
     0.726
yrbF
Toluene transporter subunit: ATP-binding component of ABC superfamily; Equals llo2022; similar to ABC transporter, ATP-binding protein.
 
     0.720
LLO_2018
Equals llo2018; weakly similar to anti-anti-sigma factor.
       0.668
yrbD
Toluene transporter subunit: membrane component of ABC superfamily; Equals llo2020; similar to unknown protein.
       0.665
lptB
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily; Equals llo2027; similar to ABC transporter, ATP-binding protein.
  
    0.621
LLO_2019
Equals llo2019; similar to unknown protein.
       0.620
kdsD
Putative arabinose 5-phosphate isomerase; Equals llo2023.
       0.613
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
       0.613
Your Current Organism:
Legionella longbeachae
NCBI taxonomy Id: 661367
Other names: L. longbeachae NSW150, Legionella longbeachae NSW150, Legionella longbeachae str. NSW150, Legionella longbeachae strain NSW150
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