Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrbDToluene transporter subunit: membrane component of ABC superfamily; Equals llo2020; similar to unknown protein. (158 aa)    
Predicted Functional Partners:
LLO_2019
Equals llo2019; similar to unknown protein.
 
 0.999
yrbE
Toluene transporter subunit: membrane component of ABC superfamily; Equals llo2021; similar to permease of ABC transporter.
 
 0.999
yrbF
Toluene transporter subunit: ATP-binding component of ABC superfamily; Equals llo2022; similar to ABC transporter, ATP-binding protein.
 
 0.999
LLO_2091
Equals llo2091; similar to ABC transporter permease protein.
 
 0.992
LLO_2018
Equals llo2018; weakly similar to anti-anti-sigma factor.
  
 0.990
LLO_2090
Equals llo2090; similar to ABC transporter ATP-binding protein.
 
 0.985
LLO_2089
Mammalian cell entry related domain protein; Equals llo2089.
     
  0.900
LLO_1052
Equals llo1052; conserved lipoprotein.
 
   
 0.856
LLO_2025
Conserved hypothetical protein; Equals llo2025.
  
  
 0.746
LLO_2017
Equals llo2017; similar to conserved hypothetical protein; Belongs to the BolA/IbaG family.
     
 0.710
Your Current Organism:
Legionella longbeachae
NCBI taxonomy Id: 661367
Other names: L. longbeachae NSW150, Legionella longbeachae NSW150, Legionella longbeachae str. NSW150, Legionella longbeachae strain NSW150
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