Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LLO_2500Equals llo2500; similar to serine protease; Belongs to the peptidase S8 family. (560 aa)    
Predicted Functional Partners:
LLO_0156
Putative serine protease, subtilase family; Equals llo0156.
 
0.943
ftsK
Equals llo2324; similar to cell division protein FtsK.
   
 
 0.632
LLO_1354
Hypothetical protein, similar to endo-beta-galactosidase; Equals llo1354.
  
   
 0.620
LLO_2600
Hypothetical protein of unknown function; Equals llo2600.
 
   
 0.599
LLO_3308
Putative endoglucanase; Equals llo3308; weakly similar to endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.598
LLO_1139
Putative serine/threonine protein kinase; Equals llo1139.
  
    0.595
LLO_2392
Putative calcium-transporting ATPase; Equals llo2392; Some similarity with eukaryotic proteins.
  
     0.591
LLO_1458
Hypothetical protein, weakly similar to eukaryotic protein; Equals llo1458.
  
     0.588
LLO_3049
Hypothetical protein (fragment); Equals llo3048b.
  
    0.549
LLO_2414
Equals llo2414; similar to hypothetical proteins.
  
     0.547
Your Current Organism:
Legionella longbeachae
NCBI taxonomy Id: 661367
Other names: L. longbeachae NSW150, Legionella longbeachae NSW150, Legionella longbeachae str. NSW150, Legionella longbeachae strain NSW150
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