Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LLO_2575Equals llo2575; similar to peptidoglycan GlcNAc deacetylase proteins. (320 aa)    
Predicted Functional Partners:
LLO_2577
Putative pre-pilin leader sequence (pilV); Equals llo2577.
       0.705
LLO_2578
Putative Tfp pilus assembly protein PilW; Equals llo2578.
       0.705
LLO_2576
Hypothetical protein; Equals llo2576.
       0.703
dotG
Putative IcmE/DotG protein; Equals llo2785.
 
     0.636
LLO_0405
Hypothetical protein; Equals llo0405.
  
     0.633
LLO_1146
Hypothetical protein, some homology with eukaryotic cysteine peptidase inhibitor; Equals llo1146.
 
    0.626
LLO_2396
Hypothetical protein; Equals llo2396.
  
     0.576
dotA
Defect in organelle trafficking protein DotA; Equals llo0364.
  
     0.552
IvrA
Legionella vir region protein; Equals llo1852.
  
     0.542
LLO_1032
Hypothetical membrane protein; Equals llo1032.
  
     0.532
Your Current Organism:
Legionella longbeachae
NCBI taxonomy Id: 661367
Other names: L. longbeachae NSW150, Legionella longbeachae NSW150, Legionella longbeachae str. NSW150, Legionella longbeachae strain NSW150
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