Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rimKTruncated transposase; Equals llo2810; Belongs to the RimK family. (302 aa)    
Predicted Functional Partners:
LLO_3399
Putative succinylglutamate desuccinylase / aspartoacylase family; Equals llo3399.
 
     0.862
LLO_1879
Putative succinylglutamate desuccinylase/Aspartoacylase family protein; Equals llo1879.
 
     0.759
LLO_3331
Equals llo3331; Putative secreted protein.
 
    0.712
LLO_2812
Equals llo2812; similar to hypothetical proteins.
       0.678
LLO_2814
Equals llo2814; similar to conserved hypothetical proteins, hypothetical cytochrome oxidase assembly protein.
     
 0.649
cyoE
Putative Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.624
LLO_2816
Hypothetical protein, SURF1 family; Equals llo2816.
       0.624
LLO_2907
Hypothetical protein with RimK-like ATP-grasp domain; Equals llo2907.
  
     0.597
LLO_2815
Hypothetical protein; Equals llo2815.
       0.411
Your Current Organism:
Legionella longbeachae
NCBI taxonomy Id: 661367
Other names: L. longbeachae NSW150, Legionella longbeachae NSW150, Legionella longbeachae str. NSW150, Legionella longbeachae strain NSW150
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