STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIE84067.1NADH dehydrogenase. (205 aa)    
Predicted Functional Partners:
AIE83925.1
Hypothetical protein.
   
 
 0.658
AIE86277.1
ABC-2 type transporter.
  
  
 0.582
AIE86609.1
ABC-2 type transporter.
  
  
 0.582
AIE88071.1
ABC-2 type transporter.
  
  
 0.582
AIE88165.1
Methionine synthase.
 
  
 0.502
AIE84068.1
Pyroglutamyl-peptidase I; Belongs to the peptidase C15 family.
       0.495
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.479
AIE84260.1
Rhodanese-like protein.
 
  
 0.467
AIE84928.1
CAAX amino terminal protease family membrane protein.
  
  
 0.457
AIE85272.1
Putative conserved integral membrane protein.
  
  
 0.457
Your Current Organism:
Fimbriimonas ginsengisoli
NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348
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