STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIE84848.1NAD-dependent epimerase/dehydratase. (289 aa)    
Predicted Functional Partners:
AIE84751.1
NAD dependent epimerase/dehydratase family.
  
  
  0.964
AIE86693.1
UDP-glucose dehydrogenase.
  
 0.935
AIE87407.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 0.909
AIE87995.1
UTP-glucose-1-phosphate uridylyltransferase.
  
 
 0.905
AIE84969.1
Galactose-1-phosphate uridylyltransferase.
   
 
 0.903
AIE84847.1
Hypothetical protein.
       0.634
AIE86647.1
D-glycero-D-manno-heptose 1-phosphate guanosyltransferase.
 
 
 0.568
AIE86646.1
NAD dependent epimerase/dehydratase family protein.
  
     0.538
rpsS
30S ribosomal protein s19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.532
AIE87774.1
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.532
Your Current Organism:
Fimbriimonas ginsengisoli
NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348
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