STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIE84915.1Metallophosphoesterase. (404 aa)    
Predicted Functional Partners:
AIE84916.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.737
AIE87948.1
PA14 domain protein.
  
     0.658
AIE86587.1
Multicopper oxidase.
 
 
 
 0.599
AIE84917.1
Putative transmembrane anti-sigma factor.
       0.525
AIE83778.1
Chloride channel protein.
 
   
 0.495
AIE84622.1
Thiosulfate reductase cytochrome subunit B-like protein.
  
     0.484
AIE85696.1
Hypothetical protein.
  
   
 0.444
AIE86900.1
Putative hybrid histidine kinase.
  
  
 0.434
AIE86226.1
YVTN beta-propeller repeat-containing protein.
 
 
   0.430
AIE85838.1
Manganese transport protein MntH.
  
     0.427
Your Current Organism:
Fimbriimonas ginsengisoli
NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348
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