STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIE84929.1Aconitate hydratase 1. (930 aa)    
Predicted Functional Partners:
AIE83644.1
NADP-dependent isocitrate dehydrogenase.
 
 0.984
AIE88185.1
acetyl-CoA carboxylase, biotin carboxylase.
  
 
 0.939
AIE86752.1
Isopropylmalate/isohomocitrate dehydrogenase.
  
 0.936
AIE87199.1
Citrate synthase 2; Belongs to the citrate synthase family.
 
 0.930
AIE87945.1
Superoxide dismutase.
   
 
 0.808
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.805
AIE87502.1
Succinate dehydrogenase iron-sulfur subunit.
  
 
 0.787
AIE87627.1
enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.737
rpmJ
Hypothetical protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.732
AIE86916.1
Hypothetical protein.
   
   0.730
Your Current Organism:
Fimbriimonas ginsengisoli
NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.