AIE85250.1 protein (Fimbriimonas ginsengisoli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AIE85250.1

Response regulator receiver domain protein (CheY-like). (226 aa)

Predicted Functional Partners:

AIE84187.1

0.983

AIE85251.1

0.907

AIE86900.1

0.907

AIE87165.1

0.901

AIE86220.1

0.831

AIE87556.1

0.831

AIE83814.1

0.826

AIE85352.1

0.795

AIE86008.1

0.794

AIE84505.1

0.773

Your Current Organism:

Fimbriimonas ginsengisoli

NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIE83814.1	AIE85250.1	OP10G_0446	OP10G_1882	Putative two somponent system sensor kinase protein.	Response regulator receiver domain protein (CheY-like).	0.826
AIE83814.1	AIE85352.1	OP10G_0446	OP10G_1984	Putative two somponent system sensor kinase protein.	Histidine kinase.	0.810
AIE83814.1	AIE86008.1	OP10G_0446	OP10G_2640	Putative two somponent system sensor kinase protein.	Two-component system sensor protein.	0.514
AIE83814.1	AIE86900.1	OP10G_0446	OP10G_3532	Putative two somponent system sensor kinase protein.	Putative hybrid histidine kinase.	0.549
AIE83814.1	AIE87165.1	OP10G_0446	OP10G_3797	Putative two somponent system sensor kinase protein.	Multi-sensor hybrid histidine kinase.	0.547
AIE84187.1	AIE85250.1	OP10G_0819	OP10G_1882	Heavy metal sensor kinase.	Response regulator receiver domain protein (CheY-like).	0.983
AIE84187.1	AIE85352.1	OP10G_0819	OP10G_1984	Heavy metal sensor kinase.	Histidine kinase.	0.440
AIE84187.1	AIE86008.1	OP10G_0819	OP10G_2640	Heavy metal sensor kinase.	Two-component system sensor protein.	0.472
AIE84187.1	AIE86900.1	OP10G_0819	OP10G_3532	Heavy metal sensor kinase.	Putative hybrid histidine kinase.	0.810
AIE84187.1	AIE87165.1	OP10G_0819	OP10G_3797	Heavy metal sensor kinase.	Multi-sensor hybrid histidine kinase.	0.799
AIE84505.1	AIE85250.1	OP10G_1137	OP10G_1882	Two-component sensor kinase, probably involved in phosphate sensing.	Response regulator receiver domain protein (CheY-like).	0.773
AIE84505.1	AIE85352.1	OP10G_1137	OP10G_1984	Two-component sensor kinase, probably involved in phosphate sensing.	Histidine kinase.	0.463
AIE84505.1	AIE86008.1	OP10G_1137	OP10G_2640	Two-component sensor kinase, probably involved in phosphate sensing.	Two-component system sensor protein.	0.519
AIE84505.1	AIE86900.1	OP10G_1137	OP10G_3532	Two-component sensor kinase, probably involved in phosphate sensing.	Putative hybrid histidine kinase.	0.582
AIE84505.1	AIE87165.1	OP10G_1137	OP10G_3797	Two-component sensor kinase, probably involved in phosphate sensing.	Multi-sensor hybrid histidine kinase.	0.576
AIE84505.1	AIE87556.1	OP10G_1137	OP10G_4188	Two-component sensor kinase, probably involved in phosphate sensing.	Phosphate regulon sensor protein PhoR (SphS).	0.925
AIE85250.1	AIE83814.1	OP10G_1882	OP10G_0446	Response regulator receiver domain protein (CheY-like).	Putative two somponent system sensor kinase protein.	0.826
AIE85250.1	AIE84187.1	OP10G_1882	OP10G_0819	Response regulator receiver domain protein (CheY-like).	Heavy metal sensor kinase.	0.983
AIE85250.1	AIE84505.1	OP10G_1882	OP10G_1137	Response regulator receiver domain protein (CheY-like).	Two-component sensor kinase, probably involved in phosphate sensing.	0.773
AIE85250.1	AIE85251.1	OP10G_1882	OP10G_1883	Response regulator receiver domain protein (CheY-like).	Sensor histidine kinase.	0.907

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

26

average node degree:

4.73

avg. local clustering coefficient:

0.878

expected number of edges:

25

PPI enrichment p-value:

0.455

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006351

Transcription, DNA-templated

6 of 143

1.62

2.02

8.08e-06

GO:0006383

Transcription by RNA polymerase III

3 of 19

2.19

1.83

0.00030

GO:0009059

Macromolecule biosynthetic process

8 of 669

1.07

1.13

2.36e-05

GO:0044271

Cellular nitrogen compound biosynthetic process

8 of 730

1.03

1.05

3.71e-05

GO:0044249

Cellular biosynthetic process

9 of 1207

0.87

0.82

6.18e-05

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003677

DNA binding

7 of 547

1.1

1.02

0.00035

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000127

Transcription factor TFIIIC complex

3 of 4

2.87

2.73

1.00e-05

GO:0005667

Transcription regulator complex

5 of 71

1.84

2.37

4.89e-06

GO:0000428

DNA-directed RNA polymerase complex

3 of 81

1.56

0.94

0.0104

GO:0005763

Mitochondrial small ribosomal subunit

2 of 29

1.83

0.73

0.0394

GO:0032991

Protein-containing complex

9 of 1827

0.69

0.56

0.00083

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3529

RNA Polymerase III Transcription Initiation From Type 1 Promoter

4 of 18

2.34

2.71

5.93e-06

CL:3271

Transcription, DNA-templated, and Mediator complex

5 of 160

1.49

1.51

0.00016

CL:3532

RNA polymerase III complex, and Transcription factor TFIIIB complex

2 of 12

2.21

0.87

0.0241

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-76066

RNA Polymerase III Transcription Initiation From Type 2 Promoter

6 of 24

2.39

4.91

1.09e-10

MAP-76061

RNA Polymerase III Transcription Initiation From Type 1 Promoter

6 of 24

2.39

4.91

1.09e-10

MAP-76046

RNA Polymerase III Transcription Initiation

6 of 27

2.34

4.84

1.09e-10

MAP-74158

RNA Polymerase III Transcription

6 of 27

2.34

4.84

1.09e-10

MAP-74160

Gene expression (Transcription)

7 of 606

1.06

1.04

8.76e-05

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About