STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIE85379.1TPR repeat-containing protein. (450 aa)    
Predicted Functional Partners:
AIE85380.1
Hypothetical protein.
 
    0.863
AIE85381.1
Hypothetical protein.
 
    0.843
AIE85376.1
Hypothetical protein.
       0.773
AIE85377.1
ATPase component NikO of energizing module of nickel ECF transporter.
       0.773
AIE85378.1
Cobalt transport protein CbiM.
       0.773
AIE84273.1
Hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
  
     0.617
AIE85382.1
Hypothetical protein.
 
     0.492
AIE88064.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
     0.447
AIE84281.1
Glycosyl transferase group 1.
  
     0.446
AIE87256.1
Glycoside hydrolase; Belongs to the glycosyl hydrolase 1 family.
  
     0.443
Your Current Organism:
Fimbriimonas ginsengisoli
NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348
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