AIE85710.1 protein (Fimbriimonas ginsengisoli)

Nodes:

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

AIE85710.1

N-Acetyl-D-glucosamine ABC transport system, permease protein 2. (300 aa)

Predicted Functional Partners:

AIE85709.1

0.982

AIE84734.1

0.924

AIE87176.1

0.924

AIE85120.1

0.923

AIE85737.1

0.923

AIE86158.1

0.923

AIE83725.1

0.845

AIE85489.1

0.843

AIE85579.1

0.843

AIE87128.1

0.843

Your Current Organism:

Fimbriimonas ginsengisoli

NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIE83725.1	AIE85120.1	OP10G_0357	OP10G_1752	Binding-protein-dependent transport systems inner membrane component.	Sugar ABC transporter permease.	0.434
AIE83725.1	AIE85709.1	OP10G_0357	OP10G_2341	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.410
AIE83725.1	AIE85710.1	OP10G_0357	OP10G_2342	Binding-protein-dependent transport systems inner membrane component.	N-Acetyl-D-glucosamine ABC transport system, permease protein 2.	0.845
AIE83725.1	AIE85737.1	OP10G_0357	OP10G_2369	Binding-protein-dependent transport systems inner membrane component.	Sugar ABC transporter permease.	0.454
AIE83725.1	AIE86158.1	OP10G_0357	OP10G_2790	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.419
AIE83725.1	AIE87176.1	OP10G_0357	OP10G_3808	Binding-protein-dependent transport systems inner membrane component.	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	0.424
AIE84734.1	AIE85120.1	OP10G_1366	OP10G_1752	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	Sugar ABC transporter permease.	0.741
AIE84734.1	AIE85579.1	OP10G_1366	OP10G_2211	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	Sugar ABC transporter, permease protein.	0.415
AIE84734.1	AIE85709.1	OP10G_1366	OP10G_2341	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	Binding-protein-dependent transport systems inner membrane component.	0.647
AIE84734.1	AIE85710.1	OP10G_1366	OP10G_2342	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	N-Acetyl-D-glucosamine ABC transport system, permease protein 2.	0.924
AIE84734.1	AIE85737.1	OP10G_1366	OP10G_2369	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	Sugar ABC transporter permease.	0.727
AIE84734.1	AIE86158.1	OP10G_1366	OP10G_2790	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	Binding-protein-dependent transport systems inner membrane component.	0.741
AIE84734.1	AIE87128.1	OP10G_1366	OP10G_3760	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	Sugar ABC transport system, permease protein.	0.438
AIE84734.1	AIE87176.1	OP10G_1366	OP10G_3808	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	0.660
AIE85120.1	AIE83725.1	OP10G_1752	OP10G_0357	Sugar ABC transporter permease.	Binding-protein-dependent transport systems inner membrane component.	0.434
AIE85120.1	AIE84734.1	OP10G_1752	OP10G_1366	Sugar ABC transporter permease.	N-Acetyl-D-glucosamine ABC transport system, permease protein 1.	0.741
AIE85120.1	AIE85489.1	OP10G_1752	OP10G_2121	Sugar ABC transporter permease.	Sugar ABC transporter permease.	0.450
AIE85120.1	AIE85579.1	OP10G_1752	OP10G_2211	Sugar ABC transporter permease.	Sugar ABC transporter, permease protein.	0.455
AIE85120.1	AIE85709.1	OP10G_1752	OP10G_2341	Sugar ABC transporter permease.	Binding-protein-dependent transport systems inner membrane component.	0.739
AIE85120.1	AIE85710.1	OP10G_1752	OP10G_2342	Sugar ABC transporter permease.	N-Acetyl-D-glucosamine ABC transport system, permease protein 2.	0.923

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Network Stats

number of nodes:

11

number of edges:

38

average node degree:

6.91

avg. local clustering coefficient:

0.966

expected number of edges:

21

PPI enrichment p-value:

0.000804

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

7 of 107

1.23

1.39

1.72e-05

GO:0010467

Gene expression

9 of 201

1.07

1.21

2.67e-06

GO:0061077

Chaperone-mediated protein folding

2 of 2

2.42

1.18

0.0068

GO:0032978

Protein insertion into membrane from inner side

2 of 2

2.42

1.18

0.0068

GO:0022417

Protein maturation by protein folding

2 of 2

2.42

1.18

0.0068

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

7 of 51

1.55

2.33

1.66e-07

GO:0019843

rRNA binding

4 of 39

1.43

1.1

0.0025

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

7 of 61

1.48

2.2

1.18e-07

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:112

Ribosome

7 of 59

1.49

2.14

3.38e-07

CL:115

Ribosome

6 of 52

1.48

2.02

1.08e-06

CL:97

Ribosome, and Ribonucleoside triphosphate biosynthetic process

8 of 102

1.31

1.77

3.38e-07

CL:118

Ribosome

5 of 47

1.44

1.65

2.86e-05

CL:120

rRNA-binding, and Structural constituent of ribosome

4 of 36

1.46

1.37

0.00039

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

dao03010

Ribosome

7 of 53

1.54

2.43

3.53e-08

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 50

1.56

2.44

6.41e-08

GOCC:0044391

Ribosomal subunit

4 of 26

1.6

1.59

0.00019

GOCC:0022626

Cytosolic ribosome

3 of 21

1.57

1.18

0.0025

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 10

1.72

0.82

0.0240

GOCC:0015934

Large ribosomal subunit

2 of 13

1.6

0.73

0.0341

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 62

1.47

2.14

2.06e-07

KW-0699

rRNA-binding

4 of 37

1.45

1.28

0.00073

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00935

Outer membrane protein (OmpH-like)

2 of 2

2.42

1.14

0.0081

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