STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIE87298.1Xylose isomerase. (249 aa)    
Predicted Functional Partners:
AIE87300.1
Xylose isomerase.
 
     0.873
AIE87299.1
Oxidoreductase domain protein.
 
    0.842
AIE85957.1
Xylose isomerase.
  
     0.533
AIE87301.1
Small Molecule Metabolism.
  
    0.457
AIE86809.1
Large exoproteins involved in heme utilization or adhesion.
  
     0.452
AIE83755.1
Large exoproteins involved in heme utilization or adhesion.
  
     0.450
AIE84479.1
Hypothetical protein.
  
     0.441
AIE87297.1
Acetyl xylan esterase.
       0.441
AIE83899.1
Xylose isomerase domain-containing protein.
  
     0.435
AIE86280.1
alpha-L-rhamnosidase.
  
     0.413
Your Current Organism:
Fimbriimonas ginsengisoli
NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.