STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIE87632.1Rod shape-determining protein MreB. (339 aa)    
Predicted Functional Partners:
AIE85647.1
Rod shape-determining protein MreC.
 
 
 0.877
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
  
 0.871
AIE86428.1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.788
AIE87631.1
Hypothetical protein.
       0.651
AIE88155.1
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 0.593
ddl
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.548
AIE88160.1
Putative penicillin-binding protein.
 
 
 0.548
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.534
tig
Cell division trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
   0.479
AIE87634.1
HNH endonuclease family protein.
       0.430
Your Current Organism:
Fimbriimonas ginsengisoli
NCBI taxonomy Id: 661478
Other names: F. ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli Gsoil 348, Fimbriimonas ginsengisoli str. Gsoil 348, Fimbriimonas ginsengisoli strain Gsoil 348, candidate division OP10 bacterium Gsoil 348
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.