Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFC40335.1 | SFC40400.1 | SAMN05216167_1011027 | SAMN05216167_1011028 | 1-aminocyclopropane-1-carboxylate deaminase. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.609 |
SFC40335.1 | SFC40466.1 | SAMN05216167_1011027 | SAMN05216167_1011029 | 1-aminocyclopropane-1-carboxylate deaminase. | Ribosomal protein S18 acetylase RimI. | 0.425 |
SFC40400.1 | SFC40335.1 | SAMN05216167_1011028 | SAMN05216167_1011027 | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 1-aminocyclopropane-1-carboxylate deaminase. | 0.609 |
SFC40400.1 | SFC40466.1 | SAMN05216167_1011028 | SAMN05216167_1011029 | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein S18 acetylase RimI. | 0.604 |
SFC40466.1 | SFC40335.1 | SAMN05216167_1011029 | SAMN05216167_1011027 | Ribosomal protein S18 acetylase RimI. | 1-aminocyclopropane-1-carboxylate deaminase. | 0.425 |
SFC40466.1 | SFC40400.1 | SAMN05216167_1011029 | SAMN05216167_1011028 | Ribosomal protein S18 acetylase RimI. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.604 |
SFC40466.1 | SFC40523.1 | SAMN05216167_1011029 | SAMN05216167_1011030 | Ribosomal protein S18 acetylase RimI. | Transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. | 0.497 |
SFC40466.1 | SFC40586.1 | SAMN05216167_1011029 | SAMN05216167_1011031 | Ribosomal protein S18 acetylase RimI. | Hypothetical protein. | 0.484 |
SFC40466.1 | SFE39524.1 | SAMN05216167_1011029 | SAMN05216167_11393 | Ribosomal protein S18 acetylase RimI. | S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine. | 0.705 |
SFC40523.1 | SFC40466.1 | SAMN05216167_1011030 | SAMN05216167_1011029 | Transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. | Ribosomal protein S18 acetylase RimI. | 0.497 |
SFC40523.1 | SFC40586.1 | SAMN05216167_1011030 | SAMN05216167_1011031 | Transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. | Hypothetical protein. | 0.766 |
SFC40586.1 | SFC40466.1 | SAMN05216167_1011031 | SAMN05216167_1011029 | Hypothetical protein. | Ribosomal protein S18 acetylase RimI. | 0.484 |
SFC40586.1 | SFC40523.1 | SAMN05216167_1011031 | SAMN05216167_1011030 | Hypothetical protein. | Transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. | 0.766 |
SFE39524.1 | SFC40466.1 | SAMN05216167_11393 | SAMN05216167_1011029 | S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine. | Ribosomal protein S18 acetylase RimI. | 0.705 |