STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB94443.1Choline dehydrogenase. (581 aa)    
Predicted Functional Partners:
SFB94498.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.950
SFB99179.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.791
SFC81429.1
Gluconate 2-dehydrogenase subunit 3.
  
   0.765
SFC36863.1
WD domain-containing protein, G-beta repeat-containing protein.
    
  0.754
SFC87063.1
WD40 repeat.
    
  0.754
SFD49385.1
WD-40 repeat-containing protein.
    
  0.754
SFD50226.1
Gluconate 2-dehydrogenase subunit 3.
  
   0.750
SFD56279.1
Gluconate 2-dehydrogenase subunit 3.
  
   0.747
SFC22961.1
Ankyrin repeat.
    
  0.741
SFC72393.1
Hypothetical protein.
    
  0.741
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.