STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC01478.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (267 aa)    
Predicted Functional Partners:
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
  0.680
SFC24833.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.647
SFC77409.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.634
SFC01528.1
Transcriptional regulator, HxlR family.
       0.549
SFC01636.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
0.531
SFC01586.1
AraC-type DNA-binding protein.
       0.495
SFE38115.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.480
SFD49963.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.403
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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