STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC09117.1Peptidase family M23. (684 aa)    
Predicted Functional Partners:
SFC09062.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.768
SFB95572.1
TonB family C-terminal domain-containing protein.
  
     0.667
SFC09161.1
Peroxiredoxin Q/BCP.
  
    0.660
SFE99155.1
Hypothetical protein.
  
     0.609
SFD97518.1
Hypothetical protein.
  
    0.601
SFF26206.1
Peptidase family M23.
  
     0.599
SFF26073.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.587
SFD79259.1
SH3 domain-containing protein.
  
     0.551
SFD09353.1
Hypothetical protein.
  
     0.537
SFD69537.1
Tfp pilus assembly protein PilF.
  
     0.535
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.