STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC09397.1RNA polymerase sigma-70 factor, ECF subfamily. (190 aa)    
Predicted Functional Partners:
SFE37458.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.770
SFD54228.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SFE17141.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SFE28172.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.767
SFE21379.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.754
SFE95173.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.754
SFF30631.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.750
SFF18535.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.748
SFF21745.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.711
SFD08540.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.699
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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