STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC34276.1AraC-type DNA-binding protein. (141 aa)    
Predicted Functional Partners:
SFC34324.1
YjbR protein.
       0.773
SFF23664.1
AraC-type DNA-binding protein.
  
     0.746
SFC63053.1
AraC-type DNA-binding protein.
  
     0.745
SFC22831.1
Transcriptional regulator, AraC family.
  
     0.743
SFE84350.1
Transcriptional regulator, AraC family.
  
     0.724
SFE27654.1
AraC-type DNA-binding protein.
  
     0.706
SFD83941.1
AraC-type DNA-binding protein.
  
     0.695
SFE26479.1
AraC-type DNA-binding protein.
  
     0.692
SFD24867.1
AraC-type DNA-binding protein.
  
   0.686
SFD56786.1
Transcriptional regulator, AraC family.
  
   0.683
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.