STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC91586.1Glucose/arabinose dehydrogenase, beta-propeller fold. (406 aa)    
Predicted Functional Partners:
SFD63212.1
Conserved hypothetical protein, HNE_0200 family.
 
      0.832
SFD34443.1
Cytochrome c.
  
  
 
0.720
SFC91655.1
methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
 
     0.572
SFD54976.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
   
 
  0.503
SFC91623.1
Uncharacterized membrane protein YckC, RDD family.
       0.500
SFE78999.1
Cytochrome c.
  
  
 
0.495
SFC31963.1
Protein of unknown function.
 
      0.483
SFE18120.1
Cytochrome c.
  
  
 
0.472
SFC91554.1
Serine O-acetyltransferase.
       0.462
SFC91682.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.459
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.