STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD67014.1Two component transcriptional regulator, LuxR family. (224 aa)    
Predicted Functional Partners:
SFC31455.1
PAS domain S-box-containing protein.
  
 0.981
SFD13720.1
PAS domain S-box-containing protein.
  
 0.981
SFD67043.1
Signal transduction histidine kinase.
 
  0.975
SFC86380.1
Hpt domain-containing protein.
   
 0.973
SFD12423.1
PAS fold-containing protein.
   
 0.973
SFF33391.1
Signal transduction histidine kinase.
   
 0.973
SFC38149.1
Tetratricopeptide repeat-containing protein.
  
  0.939
SFD04170.1
Signal transduction histidine kinase.
 
  0.894
SFE88892.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.876
SFE97502.1
Response regulator receiver domain-containing protein.
  
 0.876
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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