STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD89783.1Outer membrane protein OmpA. (437 aa)    
Predicted Functional Partners:
SFD33620.1
Outer membrane protein beta-barrel domain-containing protein.
  
   0.785
SFE36656.1
Thioredoxin-like.
  
 
 
 0.781
SFD57016.1
Outer membrane protein beta-barrel domain-containing protein.
  
   0.728
SFD15240.1
LysM domain-containing protein.
  
 
   0.726
SFD69806.1
Protein of unknown function.
  
     0.722
SFD09663.1
Hypothetical protein.
  
 
   0.719
SFC64312.1
Hypothetical protein.
  
     0.711
SFC24648.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
   
  0.707
SFE03044.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.705
SFE36829.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.701
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.