STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE01900.1Uncharacterized conserved protein, DUF952 family. (99 aa)    
Predicted Functional Partners:
SFE01861.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.754
SFE01948.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.734
SFE01989.1
Outer membrane protein, multidrug efflux system.
       0.714
SFC73075.1
Uncharacterized conserved protein, DUF952 family.
  
     0.670
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
  
  0.660
SFE02041.1
Mannose-1-phosphate guanylyltransferase (GDP).
       0.482
SFE01826.1
Transcriptional regulator, AraC family.
       0.442
SFE53124.1
Helix-turn-helix.
  
     0.404
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.