STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE22535.1TonB-linked outer membrane protein, SusC/RagA family. (1052 aa)    
Predicted Functional Partners:
SFE22500.1
Starch-binding associating with outer membrane.
 
     0.941
SFD83320.1
RagB/SusD domain-containing protein.
  
     0.767
SFE66166.1
SusD family protein.
  
     0.752
SFE44969.1
SusD family protein.
 
     0.729
SFD09957.1
Starch-binding associating with outer membrane.
  
     0.722
SFE70709.1
Starch-binding associating with outer membrane.
  
     0.713
SFE22396.1
Starch-binding associating with outer membrane.
 
     0.686
SFE67307.1
Starch-binding associating with outer membrane.
  
     0.661
SFF17272.1
Starch-binding associating with outer membrane.
  
     0.647
SFD62483.1
SusD family protein.
  
     0.621
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.