STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE40094.1Putative auto-transporter adhesin, head GIN domain. (232 aa)    
Predicted Functional Partners:
SFD23673.1
LytTr DNA-binding domain-containing protein.
  
     0.536
SFE40128.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain.
       0.531
SFC83650.1
Hypothetical protein.
    
   0.465
SFD27905.1
Pentapeptide repeat-containing protein.
    
   0.465
SFD32936.1
Pentapeptide repeat-containing protein.
    
   0.465
SFC80663.1
Hypothetical protein.
  
 
   0.453
SFC65423.1
LysM repeat-containing protein.
  
 
   0.452
SFF16180.1
OmpA family protein.
  
 
   0.446
SFF17606.1
OmpA family protein.
  
 
   0.436
SFC14626.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.434
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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