STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE66480.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (219 aa)    
Predicted Functional Partners:
SFE66514.1
FecR family protein.
 
   0.880
SFE66410.1
Starch-binding associating with outer membrane.
 
 
   0.654
SFE66377.1
TonB-linked outer membrane protein, SusC/RagA family.
 
    0.603
SFE66330.1
FecR family protein.
 
   0.591
SFE45723.1
Hypothetical protein.
  
   0.585
SFD09711.1
FecR family protein.
  
   0.578
SFF27328.1
FecR family protein.
  
   0.568
SFD53372.1
FecR family protein.
  
   0.558
SFD70528.1
FecR family protein.
  
   0.554
SFB89428.1
FecR family protein.
  
   0.548
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.