STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF02024.1Hypothetical protein. (271 aa)    
Predicted Functional Partners:
SFF01988.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
     0.910
SFF02060.1
Hypothetical protein.
       0.773
SFF19790.1
Hypothetical protein.
  
     0.745
SFF32340.1
Hypothetical protein.
  
     0.745
SFF32083.1
TraM recognition site of TraD and TraG.
  
     0.727
SFE87651.1
Type IV secretory system Conjugative DNA transfer.
  
     0.719
SFE56049.1
Bacteroides conjugative transposon TraM protein.
  
     0.566
SFE30575.1
Bacteroides conjugative transposon TraM protein.
  
     0.527
SFF02091.1
Hypothetical protein.
       0.509
SFD23294.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.504
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.