STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF23454.1Short-chain dehydrogenase. (333 aa)    
Predicted Functional Partners:
SFF23428.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
0.820
SFF23370.1
AraC-type DNA-binding protein.
       0.768
SFF23401.1
Hypothetical protein.
       0.768
SFC17346.1
Glutamate synthase (NADH) large subunit.
    
  0.747
SFD48468.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.675
SFC24833.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
   0.655
SFC77409.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
   0.628
SFE59665.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
   0.585
SFF23344.1
Uncharacterized conserved protein.
       0.577
SFD70245.1
Cytochrome P450.
  
 0.528
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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