STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF25641.1Tape measure domain-containing protein. (604 aa)    
Predicted Functional Partners:
SFC86380.1
Hpt domain-containing protein.
 
 
  0.882
SFD12423.1
PAS fold-containing protein.
   
  0.856
SFF33391.1
Signal transduction histidine kinase.
   
  0.856
SFC31455.1
PAS domain S-box-containing protein.
   
  0.842
SFD13720.1
PAS domain S-box-containing protein.
   
  0.842
SFF37241.1
CheB methylesterase.
    
  0.842
SFC88670.1
PAS domain-containing protein.
 
 
  0.798
SFE28522.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 0.777
SFF25659.1
Hypothetical protein.
       0.773
SFC12137.1
Por secretion system C-terminal sorting domain-containing protein.
  
    0.772
Your Current Organism:
Spirosoma endophyticum
NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.