Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
C440_01535 | C440_01540 | Hypothetical protein. | COG0640 Predicted transcriptional regulators. | 0.796 |
C440_01535 | C440_01545 | Hypothetical protein. | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | 0.601 |
C440_01535 | C440_01550 | Hypothetical protein. | Hypothetical protein. | 0.519 |
C440_01540 | C440_01535 | COG0640 Predicted transcriptional regulators. | Hypothetical protein. | 0.796 |
C440_01540 | C440_01545 | COG0640 Predicted transcriptional regulators. | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | 0.663 |
C440_01540 | C440_01550 | COG0640 Predicted transcriptional regulators. | Hypothetical protein. | 0.519 |
C440_01545 | C440_01535 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | Hypothetical protein. | 0.601 |
C440_01545 | C440_01540 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | COG0640 Predicted transcriptional regulators. | 0.663 |
C440_01545 | C440_01550 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | Hypothetical protein. | 0.661 |
C440_01545 | C440_01570 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | COG1960 Acyl-CoA dehydrogenases. | 0.426 |
C440_01545 | C440_03753 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | ferredoxin:NAD+ oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases. | 0.471 |
C440_01545 | C440_03948 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | Molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; COG0303 Molybdopterin biosynthesis enzyme. | 0.688 |
C440_01545 | C440_09292 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | COG2897 Rhodanese-related sulfurtransferase. | 0.486 |
C440_01545 | C440_11458 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. | 0.435 |
C440_01545 | C440_12469 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | COG0155 Sulfite reductase, beta subunit (hemoprotein). | 0.614 |
C440_01545 | C440_15859 | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | COG2259 Predicted membrane protein. | 0.424 |
C440_01550 | C440_01535 | Hypothetical protein. | Hypothetical protein. | 0.519 |
C440_01550 | C440_01540 | Hypothetical protein. | COG0640 Predicted transcriptional regulators. | 0.519 |
C440_01550 | C440_01545 | Hypothetical protein. | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | 0.661 |
C440_01570 | C440_01545 | COG1960 Acyl-CoA dehydrogenases. | Oxidoreductase molybdopterin binding protein; COG2041 Sulfite oxidase and related enzymes. | 0.426 |
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