STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_02443COG0633 Ferredoxin. (98 aa)    
Predicted Functional Partners:
C440_14799
NADH dehydrogenase, subunit CD (ubiquinone); COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
  
 
 0.886
C440_14874
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
  
 
 0.886
C440_08887
Nitrogen fixation protein NifU-like protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.781
C440_14789
COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
 
 
 0.717
C440_12469
COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
 
 0.666
C440_02448
2,3-di-O-geranylgeranylglyceryl phosphate reductase; COG0644 Dehydrogenases (flavoproteins).
       0.657
C440_14809
COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A).
   
 
 0.638
C440_14804
COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; Belongs to the complex I 20 kDa subunit family.
  
   0.629
C440_14794
COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H).
  
 
 0.619
C440_14764
COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
    
 
 0.596
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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