Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C440_03483Periplasmic solute binding protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin. (367 aa)    
Predicted Functional Partners:
C440_03473
COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 
 0.998
C440_03478
COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
 
 0.998
C440_01903
COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
 
 0.976
C440_01898
COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 
 0.973
C440_09597
Cobalamin synthesis protein/P47K; COG0523 Putative GTPases (G3E family).
  
  
 0.682
rps14P
30S ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.567
C440_03488
COG0695 Glutaredoxin and related proteins.
       0.530
C440_03493
Cobalamin adenosyltransferase.
       0.530
C440_15309
Iron-dependent repressor; COG1321 Mn-dependent transcriptional regulator.
  
 
 0.468
C440_17091
Iron/cobalamin ABC-type transporter ATP-binding protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
  
 0.467
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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