STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_06352Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3. (540 aa)    
Predicted Functional Partners:
C440_04668
Cell surface glycoprotein related protein.
 
   
  0.620
C440_04688
COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
 
 
 0.582
C440_06367
Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
    
0.493
C440_06362
Chitinase / lysozyme; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
    
0.488
C440_06402
beta-D-glucosidase; COG1472 Beta-glucosidase-related glycosidases.
  
  
  0.465
C440_06357
Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
    
0.442
C440_03423
COG1404 Subtilisin-like serine proteases.
 
 
 0.423
gdh
Glucose 1-dehydrogenase; Catalyzes the NAD(P)(+)-dependent oxidation of D-glucose to D-gluconate via gluconolactone. Can utilize both NAD(+) and NADP(+) as electron acceptor. Is involved in the degradation of glucose through a modified Entner-Doudoroff pathway.
 
    0.404
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.