STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_10468Cation efflux system protein; COG0053 Predicted Co/Zn/Cd cation transporters. (309 aa)    
Predicted Functional Partners:
C440_09442
COG0039 Malate/lactate dehydrogenases; Belongs to the LDH/MDH superfamily.
  
    0.821
C440_10463
Histidine triad (HIT) hydrolase; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; bis(5'-nucleosyl)-tetraphosphatase (asymmetrical).
       0.573
C440_03088
biotin--acetyl-CoA-carboxylase ligase; COG1654 Biotin operon repressor.
  
    0.434
C440_01958
COG2217 Cation transport ATPase.
 
 
 0.401
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.