STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_11043Hypothetical protein; COG1878 Predicted metal-dependent hydrolase. (204 aa)    
Predicted Functional Partners:
C440_09687
Branched-chain alpha-keto acid dehydrogenase subunit E2; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
   
 
  0.840
gltX
glutamyl-tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
    
  0.712
C440_14599
Hydrolase-like protein; COG0388 Predicted amidohydrolase.
    
 0.663
C440_04988
Isocitrate lyase; COG2513 PEP phosphonomutase and related enzymes.
  
  
  0.603
C440_05485
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
 
 
  0.554
C440_12324
Hypothetical protein.
    
  0.536
C440_11836
NADPH-dependent FMN reductase; COG0431 Predicted flavoprotein.
    
  0.505
C440_16684
NADPH-dependent FMN reductase; COG0431 Predicted flavoprotein.
    
  0.505
C440_08882
Cysteine desulfurase, class V aminotransferase; COG0520 Selenocysteine lyase.
  
 
  0.472
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.