STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_11438COG0559 Branched-chain amino acid ABC-type transport system, permease components. (368 aa)    
Predicted Functional Partners:
C440_11433
COG4177 ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.999
C440_11428
Putative branched-chain amino acids ABC transporter ATP-binding protein; COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.995
C440_11423
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.990
C440_13719
Putative branched-chain amino acids ABC transporter ATP-binding protein; COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.981
C440_16764
Leucine/isoleucine/valine-binding protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
 0.977
C440_02853
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.974
C440_11413
Branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein 1; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
 0.974
C440_13724
COG4177 ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.969
C440_13714
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.955
C440_02848
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.936
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.