STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_13354HoxA-like transcriptional regulator; COG0784 FOG: CheY-like receiver. (193 aa)    
Predicted Functional Partners:
C440_04573
Oxygen and light sensing his kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.885
C440_05922
Light and oxygen sensing histidine kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.881
C440_01180
Light and oxygen sensing histidine kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.842
C440_05912
Signal-transducing histidine kinase-like protein; COG0784 FOG: CheY-like receiver.
  
 
 0.819
C440_12499
Putative signal-transducing histidine kinase; COG2202 FOG: PAS/PAC domain.
  
 
 0.802
C440_00335
PAS domain-containing protein; COG0642 Signal transduction histidine kinase.
  
 
 0.760
C440_12854
PAS domain-containing protein; COG2203 FOG: GAF domain.
  
 
 0.758
C440_12564
HTR-like protein; COG2202 FOG: PAS/PAC domain.
  
  
  0.704
C440_01888
COG0835 Chemotaxis signal transduction protein.
 
 0.674
C440_04133
MCP domain-containing signal transducer; COG0840 Methyl-accepting chemotaxis protein.
  
  0.669
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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