STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_15304S-adenosylmethionine-dependent methyltransferase-like protein; COG0500 SAM-dependent methyltransferases. (258 aa)    
Predicted Functional Partners:
C440_14799
NADH dehydrogenase, subunit CD (ubiquinone); COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 0.847
C440_14874
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 0.847
rps5p
COG0098 Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 0.616
rps12P
30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
 
  0.586
rps24e
COG2004 Ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.557
C440_10103
Geranylgeranyl-diphosphate geranylgeranyltransferase; COG1562 Phytoene/squalene synthetase.
  
 
  0.556
rps19p
30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
 
  0.553
rps6e
COG2125 Ribosomal protein S6E (S10); Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.543
rps3ae
COG1890 Ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.543
rps4e
COG1471 Ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family.
    
  0.537
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.