STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C440_16674Hypothetical protein; COG2514 Predicted ring-cleavage extradiol dioxygenase. (216 aa)    
Predicted Functional Partners:
C440_09687
Branched-chain alpha-keto acid dehydrogenase subunit E2; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
  
 
 0.766
C440_12809
Fused rhodanese domain-containing protein/hydrolase; COG0607 Rhodanese-related sulfurtransferase.
  
 
  0.685
C440_03513
Hypothetical protein.
  
     0.666
C440_01260
Zn-dependent hydrolase; COG0607 Rhodanese-related sulfurtransferase.
   
 
  0.639
C440_14789
COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
  
  
 0.630
C440_00180
Hypothetical protein; COG1015 Phosphopentomutase.
  
  
  0.619
C440_02633
Hypothetical protein.
  
     0.589
C440_16669
COG0095 Lipoate-protein ligase A.
       0.547
C440_04383
Hypothetical protein.
  
     0.546
C440_07482
Putative phage integrase; COG0582 Integrase.
  
     0.536
Your Current Organism:
Haloferax mucosum
NCBI taxonomy Id: 662479
Other names: H. mucosum ATCC BAA-1512, Haloferax mucosum ATCC BAA-1512, Haloferax mucosum JCM 14792, Haloferax mucosum PA12, Haloferax sp. PA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.